YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109105680, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	37	0.79
Non-Cytoplasmic	38	123	0.91
Transmembrane Helix	124	143	0.86
Cytoplasmic	144	151	0.83
Transmembrane Helix	152	170	0.93
Non-Cytoplasmic	171	176	0.74
Transmembrane Helix	177	199	0.91
Cytoplasmic	200	208	0.84
Transmembrane Helix	209	232	0.85
Non-Cytoplasmic	233	236	0.82
Transmembrane Helix	237	256	0.87
Cytoplasmic	257	325	0.95
Transmembrane Helix	326	345	0.93
Non-Cytoplasmic	346	354	0.80
Transmembrane Helix	355	374	0.83
Cytoplasmic	375	384	0.64
Transmembrane Helix	385	405	0.90
Non-Cytoplasmic	406	412	0.70
Transmembrane Helix	413	433	0.76
Cytoplasmic	434	471	0.62
Transmembrane Helix	472	492	0.74
Non-Cytoplasmic	493	542	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFSEILDRV GSMGRFQFLH VAILGLPILN MANHNLLQIF TAATPVHHCR PPPNASAGPW  60
   61 VIPMGPNGKP ERCLRFVHPS NASLPNDTQR SMEPCLDGWV YNSTKDSIVT EWNLVCNSNK 120
  121 LKEMAQSIFM AGILIGGLVL GDLSDRFGRR PILTCSYLLL AASGSGAAFS PTFPVYVVFR 180
  181 FLCGCGISGI TLSTVILNVE WVPTRMRAIM STALGYCYTV GQFILPGLAY AIPQWRWLQL 240
  241 TVSIPFFIFF LSSWWTPESI RWLVLTGKSS KALKILRRVA AFNGKKEEGE RLSLEELKLN 300
  301 LQKEISLAKA KYTAADLFRI PMLRRMTFCL SLAWFATGFA YYSLAMGVEE FGVNLYILQI 360
  361 IFGGVDIPAK FITILSLSYL GRHTTQAAAL LLAGGAILAL TFVPLDLQTV RTVLAVFGKG 420
  421 CLSSSFSCLF LYTSELYPTV IRQTGMGVSN LWTRVGSMLS PLVKITGEVQ PFIPNIIYGI 480
  481 TALLGGSAAL FLPETLNQPL PETIEDLENW SLRAKEPKQE PEVEKASQRI PLQPYGPDLG 540
  541 SS