YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109108995
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGASLAAAQ AGWLLRAALC FCQRTETDME QGKGLTGFIL AIILLQGSLA QSFEENRKLN  60
   61 VYNQEDGSVL LTCHVKSTNI TWFKEGKMID ILTAHKNKWN LGSNTKDPRG VYQCKGSKDK 120
  121 SKTLQVYYRM CQNCIELNAA TILGFVFAEI ISIFFLAVGV YFIAGQDGVR QSRASDKQTL 180
  181 LPNDQLYQPL KDREDDQYSH LQGNQLRRN

Type	Start	End	Confidence
Signal Peptide	1	22	0.84
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	141	0.91
Transmembrane Helix	142	164	0.79
Cytoplasmic	165	209	0.76