YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109108058
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.51
Transmembrane Helix	10	33	0.68
Non-Cytoplasmic	34	102	0.48
Transmembrane Helix	103	121	0.43
Cytoplasmic	122	142	0.85
Transmembrane Helix	143	163	0.84
Non-Cytoplasmic	164	195	0.68
Transmembrane Helix	196	219	0.70
Cytoplasmic	220	234	0.75
Transmembrane Helix	235	259	0.87
Non-Cytoplasmic	260	331	0.80
Transmembrane Helix	332	354	0.90
Cytoplasmic	355	360	0.82
Transmembrane Helix	361	381	0.87
Non-Cytoplasmic	382	426	0.62
Transmembrane Helix	427	449	0.80
Cytoplasmic	450	460	0.68
Transmembrane Helix	461	481	0.80
Non-Cytoplasmic	482	488	0.60
Transmembrane Helix	489	508	0.93
Cytoplasmic	509	526	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFTIAAGT GNWFSALALG VTLLKCLLIP TYHSTDFEVH RNWLAITHSL PISQWYYEAT  60
   61 SEWTLDYPPF FAWFEYILSH VAKYFDQEML NVRNLNYSSS RTLLFQRFSV IFMDVLFVYA 120
  121 VRECCKCIDG KKVGKELTEK PKFILSVLLL WNFGLLIVDH IHFQYNGFLF GLMLLSIARL 180
  181 FQKRHMEGAF FFAVLLHFKH IYLYVAPAYG VYLLRSYCFT ANKPDGSIRW NSFSFVRVIS 240
  241 LGLVVFLVSA LSLGPFLALN QLPQVFSRLF PFKRGLCHAY WAPNFWALYN ALDKVLSVIG 300
  301 LKLKFLDPNN IPKASMTSGL VQQFQHTVLP SVTPLTTLIC TLIAILPSIF CLWFKPQGPR 360
  361 GFLRCLTLCA LSSFMFGWHV HEKAILLAIL PMSLLSVQKA GDASIFLILT TTGHYSLFPL 420
  421 LFTAPELPIK ILLMLLFTIY SISSLKTLFR KEKPLFNWME TFYLLGLGPL EVCCEFVFPF 480
  481 TSWKVKYPFL PLLLTSVYCA VGITYAWFKL YVSVLIDPPV GKTKKQ