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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109107139
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEDNKENKD HSLERGRASL IFSLKNEVGG LIKALKIFQE KHVNLLHIES RKSKRRNSEF  60
   61 EIFVDCDINR EQLNDIFHLL KSHTSVLSVN PPDNFTVKED GMETVPWFPK KISDLDCCAN 120
  121 RVLMYGSELD ADHPGFKDNV YRKRRKYFAD LAMNYKHGDP IPKIEFTEEE IKTWGTVFQE 180
  181 LNKLYPTHAC REYLKNLPLL SKHCGYREDN IPQLEDVSNF LKERTGFSIR PVAGYLSPRD 240
  241 FLSGLAFRVF HCTQYVRHSS DPFYTPEPDT CHELLGHVPL LAEPSFAQFS QEIGLASLGA 300
  301 SEEAVQKLAT CYFFTVEFGL CKQDGQLRVF GAGLLSSISE LKHALSGHAK VKPFDPKITC 360
  361 KQECLITTFQ DVYFVSESFE DAKEKMREFT KTIKRPFGVK YNPYTRSIQI LKDTKSITSA 420
  421 MNELQHDLDV VSDALAKGAN SYGQLGLGHK EDVLLPQQLN DFCKPRSVRR ITGGGGHSAV 480
  481 VTDIGDLFVC GLNKDGQLGL GHTEDIPYFT PCKSLFGCPI QQVACGWDFT IILTENGQVL 540
  541 SCGSNSFGQL GVPHGPRRCV VPQAIELHKE KVVCIAAGLR HALAATASGI VFQWGTGLAS 600
  601 CGRRLCPGQT LPLFFTAKEP SRVTVGLLVL LAVFVSPVEA TLFAARVWNP LRHRCKSGLE 660
  661 NSKAMCVLAG SDHSASLTDA GEVYVWGSNK HGQLATEAAF LPVPQKIEAH CFQNEKVTAV 720
  721 WSGWTHLVAQ TGETVAENLR LVRAAGGQLS KQL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle