YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109105452
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGRSRGAGV KLLSPPGAPG AQAGAVQWNV PDYNPRHALQ ERFLGNWTNG LALRGAVPPG  60
   61 TRAYISPHAL QLRAGRREDS VTQRASEAAA QGPRTPFPVG PRRERRKPAP PLIVRLLLNG 120
  121 RGRERPRSVG SRQRLQRSCL LRLSVPAPFR FRKHGERQAT TPEGGGCGAS GGMRVSHGGA 180
  181 GGAGMRVRAR GRRGGPVWTS LARPLGSPPP PAGAPARKPA VGGGVRGARW RAPRGTTSVV 240
  241 RFLGARSRLQ HAASKPGPGA AREKRARDLG ARAPPKAVPV CASPSLGSRA SGVAVSDGVI 300
  301 KVFNDMKVRK SSTPEEVKKR KKAVLFCLSE DKKNIILEEG KEILVGDVGQ TVDDPYATFV 360
  361 KMLPDKDCRY ALYDATYETK ESKKEDLVFI FWAPECAPLK SKMIYASSKD AIKKKLTGIK 420
  421 HELQANCYEE VKDRCTLAEK LGGSAVISLE GKPL

Type	Start	End	Confidence
Signal Peptide	1	23	0.82
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	454	0.99