YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109105438
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGILQGKAT WGKMEKDKKI NKFPLALGAQ HRSVREREGS HQLIPGVPPP TPTGDTAEVW  60
   61 GRAASERAPT APGPTSFGAP QNPAAPIQPM SSLRCVSQPG ASAASDSDKC LALQPLPCAP 120
  121 ARGGRVRLCR WLECLGVRGA EGDGRGLLCA SLIFFVIWHI IAFDELRTDF KNPIDQGNPA 180
  181 RARERLKNIE RICCLLRKLV VPEYSIHGLF CLMFLCAAEW VTLGLNIPLL FYHLWRYFHR 240
  241 PADGSEVMYD AVSIMNADIL NYCQKESWCK LAFYLLSFFY YLYSMVYTLV SF

Type	Start	End	Confidence
Cytoplasmic	1	143	0.94
Transmembrane Helix	144	163	0.82
Non-Cytoplasmic	164	208	0.89
Transmembrane Helix	209	232	0.87
Cytoplasmic	233	270	0.88
Transmembrane Helix	271	290	0.79
Non-Cytoplasmic	291	292	0.69