YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109106101
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWISREKLRK RKACVNFPEQ TIICLEEEQP ERNTENLSGP SMEEKKIGHG SFTSCESPRA  60
   61 MMENKTEVTQ FILLGLTNDS ELQVPLFIMF LFIYIITLVG NLGIIVVIFW DSCLHNPMYF 120
  121 FLSNLSLVDF CYSSAVTPTV MAGFLIEDKV ISYNACAAQM YIFVAFATVE NYLLASMAYD 180
  181 RYVAVCKPLH YTTTMTTSVC ARLTIGSYLC GFLNASIHTG DTFSLSFCKS NEVHHFFCDI 240
  241 PAVVVLSCSD RHVSELVLVY VVSFNIFLAL LVILISYIFI FITILKMHSA SGYQKASSTC 300
  301 ASHFIAVTIF YGTIIFMYLQ PSSSHSMDTD KMASVFYTMV IPMLNPLVYS LRNKEVKSAF 360
  361 KKVIEKVWKM CPD

Type	Start	End	Confidence
Cytoplasmic	1	85	0.73
Transmembrane Helix	86	110	0.88
Non-Cytoplasmic	111	124	0.56
Transmembrane Helix	125	145	0.67
Cytoplasmic	146	149	0.48
Transmembrane Helix	150	175	0.65
Non-Cytoplasmic	176	261	0.65
Transmembrane Helix	262	285	0.87
Cytoplasmic	286	298	0.84
Transmembrane Helix	299	319	0.92
Non-Cytoplasmic	320	332	0.85
Transmembrane Helix	333	351	0.79
Cytoplasmic	352	373	0.81