YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109104751
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHQDPYSVQ ATAAIAAVIT FLILFTIFGN ALVILAVLTS RSLRAPQNLF LVSLAAADIL  60
   61 VATLIIPFSL ANELLGYWYF WRTWCEVYLA LDVLFCTSSI VHLCAISLDR YWAVSRALEY 120
  121 NSKRTPRRIK CIILTVWLIA AVISLPPLIY KGDQGPQPRG RPQCKLNQEA WYILASSIGS 180
  181 FFAPCLIMIL VYLRIYLIAK RSNRRGPRAK GGPGQGESKQ PRPNRGGALA SAKLPALASL 240
  241 ASAREVNGHS KSTGEKEEGE TSEDTVTRAL PPSWAALPDS GQGQKEGVCG ASPEDEAEEE 300
  301 EEEECEPQEG PVSAASACSP PLQQPQGSRV LATLRGQVLL GRGVGAIGAQ WWRRRAQLTR 360
  361 EKRFTFVLAV VIGVFVLCWF PFFFSYSLGA ICPKHCKVPH GLFQFFFWIG YCNSSLNPVI 420
  421 YTIFNQDFRR AFRRILCRPW TQTAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.93
Transmembrane Helix	13	38	0.89
Cytoplasmic	39	48	0.88
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	87	0.92
Transmembrane Helix	88	108	0.94
Cytoplasmic	109	128	0.89
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	172	0.95
Transmembrane Helix	173	198	0.84
Cytoplasmic	199	363	0.99
Transmembrane Helix	364	383	0.98
Non-Cytoplasmic	384	404	0.87
Transmembrane Helix	405	425	0.93
Cytoplasmic	426	445	0.96