YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109103896
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPHWAVWLL AARLWGLGIG AEVWWNLVPR KTVASGELAT VVRRFSQTGI QDFLTLTLTE  60
   61 QTGLLYVGAR EALFAFSMEA LELQGAISWE APAEKKTECI QKGKNNQTEC FNFIRFLQPY 120
  121 NASHLYACGT YAFQPKCTYI NMLTFTLERG EFEDGKGKCP YDPAKGHTGL LVDGELYSAT 180
  181 LNNFLGTEPI ILRNMGPHHS MKTEYLAFWL NEPHFVGSAY VPESVGSLTG DDDKVYFFFR 240
  241 ERAVESDCYA EQVVARVARV CKGDMGGART LQKKWTTFLK ARLACSAPDW QLYFNQLQAV 300
  301 HTLQDTSWHN TTFFGVFQAR WGDMYLSAVC EYQLEEIQRV FEGPYKEYRE QAQKWGRYTD 360
  361 PVPSPRPGSC INNWHRRHGY TSSLELPDNT LNFIKKHPLM EEQVGPRWSR PLLVKKGTNF 420
  421 THLVADRVTG LDGATYTVLF IGTGDGWLLK AVSLGPWVHL IEELQLFDQE PMGSLVLAQS 480
  481 KKLLFAGSRS QLVQLPLADC MKYRSCADCV LARDPYCAWS VNTSRCVAVG GHSGSLLIQH 540
  541 VMISDTSGIC NLRGSKKVRA TPKNITVVAG TDLVLPCHLS SNLAHARWTF GGRDLPAEQP 600
  601 GSFLYDARLQ ALVVMAAQPR HAGAYHCFSE EQGARLAAEG YLVAVVAGPS VTLEARAPLE 660
  661 NLGLVWLAVV ALGAVCLVLL LLVLSLRRRL REELEKGAKA TERTLVYPLE LPKEPTSPPF 720
  721 RPCPEPDEKL WDPVGYYYSD GSLKIVPGHA RCQPGGGPPS PPPGIPGQPL PSPTRLHLGG 780
  781 GRNSNANGYV RLQLGGEDRG GLGHPLPELA DELRRKLQQR QPLPDSNPEE SSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle