YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109102574
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVQCQQSPV LAGSATLVAL GALVLYVAKP SGYGKHTESL KPAATRLPAR AAWFLQELPS  60
   61 FAVPAGILAR QPLSLFGPPG TVLLGLFCVH YFHRTFVYSL LNRGRPYPAV LIFRGIAFCA 120
  121 GNGFLQSYYL IYCAEYPDGW YTDIRFCLGV FLFILGMGVN IHSDYILRQL RKPGEITYRI 180
  181 PQGGLFTYVS GANFLGEIIE WIGYALATWS LPALAFAFFS VCFLGLRAFH HHRFYLKMFE 240
  241 DYPKSRKALI PFIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.50
Transmembrane Helix	8	28	0.86
Cytoplasmic	29	48	0.50
Transmembrane Helix	49	68	0.52
Non-Cytoplasmic	69	74	0.68
Transmembrane Helix	75	93	0.91
Cytoplasmic	94	109	0.83
Transmembrane Helix	110	132	0.90
Non-Cytoplasmic	133	143	0.82
Transmembrane Helix	144	163	0.93
Cytoplasmic	164	179	0.84
Transmembrane Helix	180	199	0.85
Non-Cytoplasmic	200	208	0.57
Transmembrane Helix	209	229	0.92
Cytoplasmic	230	254	0.96