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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109100473
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNREQEGNL CAQTDWFKKH NVEQRLYAKN RPRARRRLRV PGRRGGRKGE QNRGVGAGSL  60
   61 GDAGAGVPRL LQSAAASRSR ARGGQRVGRL GSSCAVWAAA GRGIGSRRRP LRVRSLAPPS 120
  121 PSCGGKIEMK VHMHTKFCLI CLLTFIFHHC NHCHEEHDHG PEALHRQHRG MTELEPSKFS 180
  181 KQAAENEKKY YIEKLFERYG ENGRLSFFGL EKLLTNLGLG ERKVVEINHE DLGHDHVSHL 240
  241 DILAVQEGKH FHSHNHQHSH NHLNSENQTV TSVSTKRNHK CDPEKETIEV SVKSDDKHMH 300
  301 DHNHRLRHHH RLHHHLDHNN THHFHNDSIT PSERGEPSNE PSTETNKTQE QSDVKLPKGK 360
  361 RKKKGRKSNE NSEVITPGFP PNHDQGEQYE HNRVHKPDRV HNPGHSHVHL PERNGHDPGH 420
  421 GHQDLDPDNE GELRHTRKRE APHVKNNAII SLRKDLNEDD HHHECLNVTQ LLKYYGHGAN 480
  481 SPISTDLFTY LCPALLYQID SRLCIEHFDK LLVEDINKDK NLVPEDEANI GASAWICGII 540
  541 SITVISLLSL LGVILVPIIN QGCFKFLLTF LVALAVGTMS GDALLHLLPH SQGGHDHSHQ 600
  601 HAHGHGHSHG HESKKFLEEY DAVLKGLVAL GGIYLLFIIE HCIRMFKHYK QQRGKQKWFM 660
  661 KQNTEESAIG RKLSDHKLNN TPDSDWLQLK PLAGTDDSVV SEDRLNETEL TDLEGQQESP 720
  721 PKNYLCIEEE KIIDHSHSDG LHTIHEHDLH AAAHNHHGEN KTVLRKHNHQ WHHKHSHHSH 780
  781 GPCHSGSDLK ETGIANIAWM VIMGDGIHNF SDGLAIGAAF SAGLTGGIST SIAVFCHELP 840
  841 HELGDFAVLL KAGMTVKQAI VYNLLSAMMA YIGMLIGTAV GQYANNITLW IFAVTAGMFL 900
  901 YVALVDMLPE MLHGDGDNEE HGFCPVGQFI LQNLGLLFGF AIMLVIALYE DKIVFDIQF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle