YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109100395
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSQLKTKL QRKRSLWLSG GLVICAQRGR TAVGGAHARR WKGPRDSRYV ALALECLAMG  60
   61 QREVWRLMSR FNAFKRTNTI LHHLRMSKHT DAAEDVLLEK KGCAGVITLN RPKFLNALTL 120
  121 NMIRQIYSQL KKWEQDPETF LIIIKGAGGK AFCAGGDIRV ISEAEKAKQN IAPVFFREEY 180
  181 MLNNAVGSCQ KPYVALIHGI TMGGGVGLSV HGQFRVATEK CLFAMPETAI GLFPDVGGGY 240
  241 FLPRLQGKLG YFLALTGFRL KGRDVYRAGI ATHFVDSEKL AMLEEDLLAL KSPSKENIAS 300
  301 VLENYHTESK IDRDKSFMLE EHMDKINSCF SANTMEEIIE NLKQDGSSFA LEQLKVINKM 360
  361 SPTSLKITLR QLMEGSSKTL QEVLTMEYRL SQACMRGHDF HEGVRAVLID KDQSPKWKPA 420
  421 DLKEVTDEDL NNHFKSLGSN DLKF

Type	Start	End	Confidence
Signal Peptide	1	34	0.95
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	444	0.99