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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109100230
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.75
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFEAYLTPV SCVLLTCSAA GWLTADGGLL RTDSLPDAPI SILNFPTFVL PTLRSRGGLR  60
   61 PPGPVSYMTA TRQRAAYAGC GGHRHKLLTS RPTRPNNCQP RVGSRDRGVA RAGRGANWRA 120
  121 AGARGLMGSS WLGLSLCQWR LLLVLEAGCA VAAETGGGGR PGRAAPASCS CEFLWTIDDI 180
  181 YHCAQFLQIK DGWIIFSMEG KTKPSTVEVL ESIDKEIQAL EEFREKNQRL QKLWVGRLIL 240
  241 YSSVLYLFTC LIVYLWYLPD EFTARLAMTL PFFAFPLIIW SIRTVLIFFF SKRTERNNEA 300
  301 LDDLKSQRKK ILEEVMEKET YKTAKLILER FDPDSKKAKE CEPPSAGAAV TARPGQEIRQ 360
  361 RTAAQRNLSP TPASPNQGPP PQVPVSPGPP KDSSAPGGPP ERTVTPALPS NVLPRHLGSP 420
  421 ATSVPGMGLH PPGPPLARPI LPRERGALDR IVEYLVGDGP QNRYALICQQ CFSHNGMALK 480
  481 EEFEYIAFRC AYCFFLNPAR KTRPQAPRLP EFSFEKRQMV EGSSSVGPLP SGSVLSSDNQ 540
  541 FTEESLEQDV LDNSTEQTDD KMPATEQTHE GIEKASDSEE PEEKQETENE EASVIEANST 600
  601 VPGADSIPDP ELSGEYLTAE 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle