YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109100123
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.53
Transmembrane Helix	44	67	0.77
Non-Cytoplasmic	68	103	0.45
Transmembrane Helix	104	127	0.89
Cytoplasmic	128	135	0.71
Transmembrane Helix	136	156	0.69
Non-Cytoplasmic	157	169	0.80
Transmembrane Helix	170	190	0.92
Cytoplasmic	191	210	0.93
Transmembrane Helix	211	234	0.89
Non-Cytoplasmic	235	248	0.83
Transmembrane Helix	249	268	0.91
Cytoplasmic	269	276	0.86
Transmembrane Helix	277	296	0.95
Non-Cytoplasmic	297	317	0.91
Transmembrane Helix	318	338	0.92
Cytoplasmic	339	344	0.86
Transmembrane Helix	345	367	0.89
Non-Cytoplasmic	368	383	0.87
Transmembrane Helix	384	405	0.90
Cytoplasmic	406	414	0.88
Transmembrane Helix	415	437	0.89
Non-Cytoplasmic	438	448	0.79
Transmembrane Helix	449	473	0.82
Cytoplasmic	474	482	0.84
Transmembrane Helix	483	504	0.94
Non-Cytoplasmic	505	522	0.94
Transmembrane Helix	523	544	0.92
Cytoplasmic	545	660	0.99
Transmembrane Helix	661	682	0.92
Non-Cytoplasmic	683	870	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFSNLPAE NLTIAVNMTK TLPTALTHGF NSTNDPPSMS ITRLFPALLE CFGIVLCGYI  60
   61 AGRANVITST QAKGLGNFVS RFALPALLFK NMVVLNFSNV DWSFLYSILI AKASVFFIVC 120
  121 VLTLLVASPD SRFSKAGLFP IFATQSNDFA LGYPIVEALY QTTYPEYLQY IYLVAPISLM 180
  181 MLNPIGFIFC EIQKWKDTQN ASQNKVKIVG LGLLRVLQNP IVFMVFIGIA FNFILDRKVP 240
  241 VYVENFLDGL GNSFSGSALF YLGLTMVGKI KRLKKSAFVV LILLITAKLL VLPLLCREMV 300
  301 ELLDKGDNVV NHTSLSNYAF LYGVFPVAPG VAIFATQFNM EVEIITSGMV ISTFVSAPIM 360
  361 YVSAWLLTFP TMDPKPLAYA IQNVSFDISI VSLISLVWSL AILLLSKKYK QLPHMLTTNL 420
  421 LIAQSIVCAG MMIWNFVKEK NFVGQILVFV LLYSSLYSTY LWTGLLAISL FLLKKRERVQ 480
  481 IPVGIIIISG WGIPALLVGV LLITGKHNGE SIDSAFFYGK EQMITTAVTL FCSILIAGIS 540
  541 LMCMNRTTQA GSYEGFDQSQ SHKAVEPGNT AFEETPARIN EPELFTSSIP ETSCCSCSMG 600
  601 NGELHCPSIE PIANTSTSEP VIPSFEKNDH CVSRCNSQSC ILAQEEEQYL QSGDQQLTRH 660
  661 VLLCLLLIIG LFAVIFSCLS LLSSWDYRRM PPCLANFCIL VGKGQEEFSL SAFLHLKMAL 720
  721 NLIFRLEFLW NNKETAENRD SPVSEEIKMT CQQFIHYHRD LCIRNIVKER RCGATTSAGT 780
  781 FCGCDLVNWL IEVGLASDRG EAVIYGDRLV QGGVIQHITN EYEFRDEYLF YRFLQRSPEQ 840
  841 SPPAINANTL QQERYKEIEH LSSPSHSPKT