YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109099096
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPPQPSAAH QGRGGRSGLL PKGPAMLRRL GWLVSYSLAV LLLGCLLFLR KEAKPAGDPT  60
   61 AHQPFWAPPA PRHSRCPPNH TVASASLSLP SRHRLFLTYR HCRNFSILLE PSGCSKDTFL 120
  121 LLAIKSQPGH VERRAAIRST WGRAGGWAKG RQLKLVFLLG VAGPAPPAQL LAYESREFDD 180
  181 ILQWDFTEDF FNLTLKELHL QRWVVAACPQ AHFMLKGDDD VFVHIPNVLE FLDGWDPAQD 240
  241 LLVGDVIRQA LPNRNTKVKY FIPLSMYRAT HYPPYAGGGG YVMSRATVRR LQATMEEAEL 300
  301 FPIDDVFVGM CLRRLGLSPM HHAGFKTFGI RQPLDPLDPC LYRGLLLVHR LSPLEMWTMW 360
  361 ALVTDEGLKC AAAPIPQR

Type	Start	End	Confidence
Cytoplasmic	1	29	0.41
Transmembrane Helix	30	49	0.64
Non-Cytoplasmic	50	378	0.83