YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109096771
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCRSYRVSS GHRVGNFSSC SAMTPQNLNR FRANSVSCWS GPGFRGLGSF GSRSVITFGS  60
   61 YSPRRAAVGP RPGRCGVGFG AGCGMGFGDG RGVGLGPGAG SCVGLGFGAG SGIGYGFGGP 120
  121 GFGYRVGGVG VPAAPSITAV TVNKSLLTPL NLEIDPNAQR VKKDEKEQIK TLNNKFASFI 180
  181 DKVRFLEQQN KLLETKWSFL QEQKCVRSNL EPLFESYITN LRRQLEALVS DQARLQAERN 240
  241 HLQDVLEGFK KKYEEEVVCR ANAENEFVAL KKDVDAAFMN KSDLEANVDT LTQEIDFLKT 300
  301 LYMEEIQLLQ SHISETSVIV KMDNSRDLDL DGIIAEVKAQ YEEVARRSRA DAEAWYQTKY 360
  361 EEMQVTAGQH CDNLRNTRNE INELTRLIQR LKAEIEHTKA QRAKLEAAVA EAERQGEATL 420
  421 NDAKCKLADL ECALQQAKQD MARQLREYQE LMNAKLGLDI EIATYRRLLE GEESRLCEGV 480
  481 GPVNISVSSS RGGLVCGPEP LVASSTLSRS GVTFSGSSSV CATSGVLASC GPNLGGAQVA 540
  541 PATGDLLSTG TRSGSVLISE ACVPSVPCPL PTQGGFSSCS GGRSSSVHFV STTTSRRTKY 600
  601

Type	Start	End	Confidence
Cytoplasmic	1	71	0.52
Transmembrane Helix	72	88	0.34
Non-Cytoplasmic	89	600	0.81