YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109096134
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	61	0.86
Transmembrane Helix	62	83	0.85
Non-Cytoplasmic	84	92	0.77
Transmembrane Helix	93	115	0.89
Cytoplasmic	116	130	0.83
Transmembrane Helix	131	151	0.86
Non-Cytoplasmic	152	160	0.61
Transmembrane Helix	161	185	0.54
Cytoplasmic	186	252	0.68
Transmembrane Helix	253	276	0.89
Non-Cytoplasmic	277	285	0.67
Transmembrane Helix	286	308	0.85
Cytoplasmic	309	323	0.63
Transmembrane Helix	324	342	0.95
Non-Cytoplasmic	343	367	0.66
Transmembrane Helix	368	385	0.79
Cytoplasmic	386	392	0.60
Transmembrane Helix	393	413	0.93
Non-Cytoplasmic	414	433	0.63
Transmembrane Helix	434	456	0.80
Cytoplasmic	457	473	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLEGYYFS AALSCTFLVS CLLFSAFSRA LREPYMDEIF HLPQAQRYCE GHFSLSQWDP  60
   61 MITTLPGLYL VSVGVVKPAI WIFGWSEHVV CSIGMLRFVN LLFSVGNFYL LYLLFRKVQP 120
  121 RNKAASSIQR VLSTLTLAVF PTLYFFNFLY YTEAGSMFFT LFAYLMCLYG NHKTSAFLGF 180
  181 CGFMFRQTNI IWAVFCAGNV IAQKLTEAWK TELQKKEDRL PPIKGPFVTF RKILQFLLAY 240
  241 SMSFKNLSVL FRLTWPYILL GFLFCAFVVV NGGIVIGDRS SHEACLHFPQ LFYFFSFTLF 300
  301 FSFPHLLSPG KIKTFLSLVW KRRILFFVVT LVSVFLVWKF TYAHKYLLAD NRHYTFYVWK 360
  361 RVFQRYEIVK YLLVPAYIFA GWSIADSLKS KSVFWNLMFF ICLFIVIVPQ KLLEFRYFIL 420
  421 PYVIYRLNIP LPPTSRLVCE LSCYAIVNFI TFYLFLNKTF QWPNSQDIQR FMW