YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109096009
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAALPAWV SLRSRARTLR AFSTAVSPVT PVSTRGLQEG TSRNERPPRR KALPPRTEKM  60
   61 AVDQDWPSVY PVAAPFKPSA VPLPVRMGYP VKRGMPMAKE GNLELLKIPN FLHLTPVAIK 120
  121 KHCEALKDFC TEWPAALDSD EKCEKHFPIE IDSTDYVSSG PSIRNPRARV VVLRVKLSSL 180
  181 NLDDHAKKKL IKLVGERYCK TTDVLTIKTD RCPLRRQNRD YAVYLLTVLY HESWKTEEWE 240
  241 KSKTEADMEE YIWENSSSER NILETLLQMK AAEKNTEINK EELLGTKEVE EYKKSVVSLK 300
  301 NEEENEDLLS QYKESVKRLL NVT

Type	Start	End	Confidence
Signal Peptide	1	34	0.70
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	323	0.99