YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109095057, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEPTENRLG CSRTPEPDVR LRKGHHLDGT RRGDNDSHQG DLEPILEASV LTSHHKKSSE  60
   61 EHECRDEAPQ EDEGFMGMSP LLQAHHAMEK MEEFVCKVWE GRWRVIPHDV LPDWLKDNDF 120
  121 LLHGHRPPMP SFRACFKSIF RIHTETGNIW THLLGCVFFL CLGIFYMFRP NISFVAPLQE 180
  181 KVVFGLFFLG AILCLSFSWL FHTVYCHSEG VSRLFSKLDY SGIALLIMGS FVPWLYYSFY 240
  241 CNPQPCFIYL IVICVLGIAA IIVSQWDMFA TPQYRGVRAG VFLGLGLSGI IPTLHYVISE 300
  301 GFLKAATIGQ IGWLMLMASL YITGAALYAA RIPERFFPGK CDIWFHSHQL FHIFVVAGAF 360
  361 VHFHGVSNLQ EFRFMIGGGC SEEDAL

Type	Start	End	Confidence
Cytoplasmic	1	148	0.97
Transmembrane Helix	149	168	0.96
Non-Cytoplasmic	169	182	0.89
Transmembrane Helix	183	205	0.90
Cytoplasmic	206	217	0.86
Transmembrane Helix	218	237	0.93
Non-Cytoplasmic	238	245	0.79
Transmembrane Helix	246	266	0.95
Cytoplasmic	267	276	0.78
Transmembrane Helix	277	298	0.91
Non-Cytoplasmic	299	308	0.79
Transmembrane Helix	309	330	0.91
Cytoplasmic	331	344	0.89
Transmembrane Helix	345	366	0.87
Non-Cytoplasmic	367	386	0.94