YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109093971
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.79
Transmembrane Helix	26	48	0.88
Cytoplasmic	49	64	0.71
Transmembrane Helix	65	87	0.75
Non-Cytoplasmic	88	102	0.70
Transmembrane Helix	103	121	0.88
Cytoplasmic	122	142	0.81
Transmembrane Helix	143	164	0.91
Non-Cytoplasmic	165	176	0.65
Transmembrane Helix	177	198	0.87
Cytoplasmic	199	204	0.66
Transmembrane Helix	205	223	0.90
Non-Cytoplasmic	224	273	0.93
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	311	0.82
Transmembrane Helix	312	330	0.89
Non-Cytoplasmic	331	382	0.91
Transmembrane Helix	383	407	0.85
Cytoplasmic	408	422	0.93
Transmembrane Helix	423	444	0.93
Non-Cytoplasmic	445	457	0.78
Transmembrane Helix	458	477	0.91
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.91
Transmembrane Helix	526	548	0.91
Cytoplasmic	549	634	0.99
Transmembrane Helix	635	657	0.91
Non-Cytoplasmic	658	659	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVSPSTT TETPEPPPLS DRIRNAADVS VIVIYFLVVM AVGLWAMLRT NRGTIGGFFL  60
   61 AGRDMAWWPM GASLFASNIG SNHYVGLAGT GAASGVATVT FEWTSSVMLP ILGWIFVPIY 120
  121 IKSGVMTMPE YLKKRFGGER LQVYLSILSL FICVVLLIAS DMFAGAIFIK LALGLDLYLA 180
  181 IFILLAMTAV YTITGGLASV IYTDTLQTII MLIGSFILMG FAFNEVGGYE SFTEKYMNAI 240
  241 PSVVEGDNLT ISASCYTPRE DSFHIFRDPV TGDIPWPGII FGMPITALWY WCTNQVIVQR 300
  301 CLSGKDMSHV KAACIMCAYL KLLPMFLMVM PGMISRILYT DKVACVVPSE CVKHCGIDVG 360
  361 CTNYAYPTMV LELMPQGLRG LMLSVMLASL ISSLTSIFNS ASTLFAIDLY TKVRKQASEK 420
  421 EILIAGRIFV LLLTVVSIVW VPLVQVSQNG QLIHYTESIS SYLGPPIAAV YVLAIFCKRV 480
  481 NEQGAFWGLM VGLAMGLIRM ITEFVYGTPS CLAPSNCPKI ICGVHYLYFS IILFFGSMLV 540
  541 VLGISLLTKP IPDVHLYRLC WVLRNSTEER IDIDAEEKSQ EETDDGVEED YPEQSRGCLK 600
  601 KAYDLFCGLQ KGPKLTKEEE EALRKKLTDT SERPLWRTIV NINAILLLAV VVFIYGYYA