YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109093153
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEADGLRQR RPLRPQVVTD DDGQAPEAKD GSSFSGRVFR VTFLMLAVSL TVPLLGAMML  60
   61 LESPIDPQPL SFKEPPLLLG VLHPNTKLRQ AERLFENQLI GPESIAHIGD VMFTGTADGR 120
  121 VVKLENGEIE TIARFGSGPC KTRDDEPVCG RPLGIRAGPN GTLFVADAYK GLFEVNPWKR 180
  181 EVKLLLSSET PIEGKKMSFV NDLTVTQDGR KIYFTDSSSK WQRRDYLLLV MEGTDDGRLL 240
  241 EYDTVTREVK VLLDQLRFPN GVQLSPAEDF VLVAETTMAR IRRVYVSGLM KGGADLFVEN 300
  301 MPGFPDNIRP SSFGGYWVGM STIRPNPGFS MLDFLSERPW IKRMIFKLFS QETVMKFVPR 360
  361 YSLVLELSDS GAFRRSLHDP DGLVAAYVSE VHEHDGHLYL GSFRSPFLCR LSLQAV

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	61	0.94
Non-Cytoplasmic	62	416	0.99