YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109093084
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	495	0.95
Transmembrane Helix	496	520	0.86
Cytoplasmic	521	535	0.90
Transmembrane Helix	536	560	0.83
Non-Cytoplasmic	561	568	0.79
Transmembrane Helix	569	590	0.91
Cytoplasmic	591	598	0.70
Transmembrane Helix	599	619	0.85
Non-Cytoplasmic	620	627	0.71
Transmembrane Helix	628	647	0.92
Cytoplasmic	648	864	0.98
Transmembrane Helix	865	887	0.85
Non-Cytoplasmic	888	896	0.67
Transmembrane Helix	897	920	0.85
Cytoplasmic	921	931	0.78
Transmembrane Helix	932	950	0.89
Non-Cytoplasmic	951	966	0.82
Transmembrane Helix	967	988	0.93
Cytoplasmic	989	996	0.89
Transmembrane Helix	997	1020	0.85
Non-Cytoplasmic	1021	1031	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNRARCSPE DLHEQLEGAS WTQEALGAVE EEGASLGHLL AHQRMVTPGW LTLPSSIQFS  60
   61 WVWQRSLDTH PLHVCRAGEV CHGSSYTFKV PGRVLWIKRL APAHLPVPRC YQISIVDSHF 120
  121 NRMLSFENNN SKNFLEKAEE VRRPARHHCH RHHSQYEMWL LGLCLPKLGN PLRHGQTRSS 180
  181 YSVTSCLSSG GRQLVTGEDG ISSSHRFNVF LIGNRIRVAL EAEDETMEKD FLSGFPSEDM 240
  241 LTLADSGCDE QDSQPPGSPS RRTQPSRFKV TRTEWEWRCS ALTLARNLHP VLYEALRDSV 300
  301 SSSANGKLLP WLAERFSWMV LCIPVSKKKS RIPVHREGRV NTSPPKELLC PEDHFPGLLE 360
  361 LWDSQHPVLS RQPTPVPSSQ SLQSCRLPPL VTCDILDTQE AALPQVPSSV PSPREEPLWQ 420
  421 LGLLSVSLHG PMTPELDLMD LIGEDRKWMM GRKLMQVNDT LTSEDAGLRN GKNCTEPALH 480
  481 EFPNDIFTNE DRRQGAVVLH VLCAIYMFYA LAIVCDDFFV PSLEKICERL HLSEDVAGAT 540
  541 FMAAGSSAPE LFTSVIGVFI TKGDVGVGTI VGSAVFNILC IIGVCGLFAG QVVALSSWCL 600
  601 LRDSIYYTLS VIALIVFIYD EKVSWWESLV LVLMYLIYIV IMKYNACIHQ CFERRTKGAG 660
  661 NMVNGLANNA EIDDSSNCDA TVVLLKKANF HRKASVIMVD ELLSAYPHQL SFSEAGLRIM 720
  721 ITSHFPPKTR LSMASRMLIN ERQRLINSRA YTNGESEVAI KIPIKHTVEN GTGPSSAPDR 780
  781 GVNGTRRDDV VAEAGNETEN ENEDNENDEE EEEDEDDDEG PYTPFDPPSG KLETVKWAFT 840
  841 WPLSFVLYFT VPNCNKPRWE KWFMVTFASS TLWIAAFSYM MVWMVTIIGY TLGIPDVIMG 900
  901 ITFLAAGTSV PDCMASLIVA RQGMGDMAVS NSIGSNVFDI LIGLGLPWAL QTLAVDYGSY 960
  961 IRLNSRGLIY SVGLLLASVF VTVFGVHLNK WQLDKKLGCG CLLLYGVFLC FSIMTEFNVF1020
 1021 TFVNLPMCGD H