YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109092775
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.90
Transmembrane Helix	105	124	0.83
Non-Cytoplasmic	125	134	0.70
Transmembrane Helix	135	157	0.83
Cytoplasmic	158	209	0.64
Transmembrane Helix	210	232	0.81
Non-Cytoplasmic	233	261	0.58
Transmembrane Helix	262	282	0.90
Cytoplasmic	283	302	0.90
Transmembrane Helix	303	325	0.91
Non-Cytoplasmic	326	362	0.92
Transmembrane Helix	363	385	0.87
Cytoplasmic	386	450	0.92
Transmembrane Helix	451	471	0.92
Non-Cytoplasmic	472	478	0.77
Transmembrane Helix	479	501	0.91
Cytoplasmic	502	508	0.85
Transmembrane Helix	509	527	0.95
Non-Cytoplasmic	528	544	0.84
Transmembrane Helix	545	565	0.91
Cytoplasmic	566	643	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGKNTTSK SMEAGSSTEG KYEDEAKHPA FFTLPVVING GATSSGEQDN EDTELMAIYT  60
   61 TENGIAEKSS LAETLDSTGS LDPQRSDMIY TIEDVPPWYL CIFLGLQHYL TCFSGTIAVP 120
  121 FLLADAMCVG YDQWATSQLI GTIFFCVGIT TLLQTTFGCR LPLFQASAFA FLAPARAILS 180
  181 LDKWKCNTTG NCKLLHTEHI WYPRIREIQG AIIMSSLIEV VIGLLGLPGA LLKYIGPLTI 240
  241 TPTVALIGLS GFQAAGERAG KHWGIAMLTI FLVLLFSQYA RNVKFPLPIY KSKKGWTAYK 300
  301 LQLFKMFPII LAILVSWLLC FIFTVTDVFP PDSTKYGFYA RTDARQGVLL VAPWFKVPYP 360
  361 FQWGLPTVSA AGVIGMLSAV VASIIESIGD YYACARLSCA PPPPIHAINR GIFVEGLSCV 420
  421 LDGIFGTGNG STSSSPNIGV LGITKVGSRR VIQCGAALML ALGMIGKFSA LFASLPDPVL 480
  481 GALFCTLFGM ITAVGLSNLQ FIDLNSSRNL FVLGFSIFFG LVLPSYLRQN PLVTGITGID 540
  541 QVLNVLLTTA MFVGGCVAFI LDNTIPGTPE ERGIRKWKKG VGKGNKSLDG MESYNLPFGM 600
  601 NIIKKYRCFS YLPISPTFVG YTWKGLRKSD NSRSSDEDSQ ATG