YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109091951
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAERFAIRL LVPCSGGSGK GCTHYACAIS APPLRSFPRK RFFPTESLPP LRSLELCLSR  60
   61 PAAPLLHGHV CQRCFGSQRV RLGHARTLRS SSLSLGMAGQ FRSYVWDPLL ILSQIVLMQT 120
  121 VYYGSLGLWL ALVDGLVRSS PSLDQMFDAE ILGFSTPPGR LSMMSFILNA LTCALGLLYF 180
  181 IRRGKQCLDF TVTVHFFHLL GCWFYSSRFP SALTWWLVQA VCIALMAVIG EYLCMRTELK 240
  241 EIPLNSAPKS NV

Type	Start	End	Confidence
Cytoplasmic	1	108	0.94
Transmembrane Helix	109	132	0.74
Non-Cytoplasmic	133	160	0.91
Transmembrane Helix	161	181	0.94
Cytoplasmic	182	186	0.93
Transmembrane Helix	187	207	0.88
Non-Cytoplasmic	208	214	0.75
Transmembrane Helix	215	235	0.93
Cytoplasmic	236	252	0.97