YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109089992
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.98
Transmembrane Helix	70	89	0.94
Non-Cytoplasmic	90	99	0.76
Transmembrane Helix	100	118	0.95
Cytoplasmic	119	131	0.85
Transmembrane Helix	132	151	0.96
Non-Cytoplasmic	152	158	0.73
Transmembrane Helix	159	178	0.95
Cytoplasmic	179	186	0.87
Transmembrane Helix	187	206	0.94
Non-Cytoplasmic	207	219	0.81
Transmembrane Helix	220	240	0.92
Cytoplasmic	241	251	0.82
Transmembrane Helix	252	272	0.95
Non-Cytoplasmic	273	283	0.73
Transmembrane Helix	284	301	0.97
Cytoplasmic	302	311	0.82
Transmembrane Helix	312	331	0.94
Non-Cytoplasmic	332	336	0.86
Transmembrane Helix	337	359	0.86
Cytoplasmic	360	363	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPQDSAGAV ELEKVGLPLT DDAPPGASEE PAAAEAAGAP DSGRCWLCLS SPCCSRTEPE  60
   61 AKKKAPCPGL GLFYTLLSAF CFSVSSLLVK KVQDVHAVEI SAFRCVLQML IVLPCLIYRK 120
  121 TGFIGPKSHR IFLILRGVLG STSMMLIYYA FQTMALADAT VITFSSPVFT SIFAWICLKE 180
  181 KYSPWDALFT MFTIAGVILI VRPPFLFGSL GIEESYSVHL KGTFAAIGHA VFAASTLVIL 240
  241 RKMGKSVDYF LTIWYYVVLG LVETVIILFI LGEWSLPYCG LDRLFLIFIA LFGLGAQIFI 300
  301 TKALQIEKAG PVAIMRTMDV VFAFIFQIIF FNNVPTWWTV GGAVCVVASN VGAAVRKWYQ 360
  361 SSK