YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109089844
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQLLVAACW MLPLGSMYGY DKKGNNANPE ANMNIEFKTS LGNMSQIISY WGYPCEEYDV  60
   61 TTKDGYILGI YRIPHGRGCP GRTAPKPAVY LQHGLIASAS NWICNLPNNS LAFLLADSGY 120
  121 DVWLGNSRGN TWSRKHLKLS PESPEYWAFS LDEMAKYDLP ATISFIIEKT GQKRLYYVGH 180
  181 SQGTTIAFIA FSTNPELAKR IKIFFALAPV VTLKYTRSPM KKLTTLSRQV VKVLFGDKMF 240
  241 HPHTLFDKFI ATKVCSRKLF HRICSNFLFT LSGFDPQNLN MSRLDVYLSH NPAGTSVQNM 300
  301 LHWAQAVNSG RLQAFDWGNS DQNMMHFHQL TPPLYNITKM EVPTAIWNGG QDIVADPKDV 360
  361 KNLLPQIANL IYYKLIPHYN HVDFYLGEDA PQEIYQDLIR LMEAYLKN

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	408	0.99