YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109089644
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEKVEKPD TKEKKPEAKK ADAGGKVKKG NLKAKKPKKG KPHCSHNPVL VRGIGRYSRS  60
   61 AMYSRKAMYK RKYSAAKSKV EKKKKEKVLA TLTKPVGGDK NGGTRVVKLH KMPRYYPTED 120
  121 VPRKLFSHGK KPFSQHMRKL RASITPGTIL IILTGRHRGK RVVFLKQLAS GLLLVTGPLV 180
  181 LNRVPLRRTH QKFVIATSTK IGISNVKIPK HLTDAYFKKQ QLRKPRHQEG EIFDTEKEKY 240
  241 EITEQRKIDQ KAVDSQILPK IKAVPQLQGY LRSVFALTNG IYPHKLVF

Type	Start	End	Confidence
Cytoplasmic	1	161	0.53
Transmembrane Helix	162	181	0.53
Non-Cytoplasmic	182	288	0.75