YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109088316
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLTEVAAL GSGARAARWA GSPPTLLLLS PTSPGCAATM ASSDEDGTNG GASEAGEDRE  60
   61 APGKRRRLGL LATAWLTFYN IAMTAGWLVL AIAMVRFYME KGTHRGLYKS VQKTLKFFQT 120
  121 FALLEIVHCL IGIVPTSVLV TGVQVSSRIF MVWLITHSIK PIQNEESVVL FLVAWTVTEI 180
  181 TRYSFYTFSL LDHLPYFIKW ARYNFFIILY PVGVAGELLT IYAALPYVKK TGMFSIRLPN 240
  241 KYNVSFDYYY FLLITMASYI PLFPQLYFHM LRQRRKVLHG EVIVEKDD

Type	Start	End	Confidence
Cytoplasmic	1	70	0.57
Transmembrane Helix	71	98	0.77
Non-Cytoplasmic	99	120	0.48
Transmembrane Helix	121	146	0.79
Cytoplasmic	147	204	0.51
Transmembrane Helix	205	225	0.94
Non-Cytoplasmic	226	247	0.75
Transmembrane Helix	248	268	0.93
Cytoplasmic	269	288	0.78