YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109088214
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	960	0.97
Transmembrane Helix	961	981	0.73
Cytoplasmic	982	1041	0.83
Transmembrane Helix	1042	1064	0.94
Non-Cytoplasmic	1065	1084	0.90
Transmembrane Helix	1085	1107	0.85
Cytoplasmic	1108	1124	0.85
Transmembrane Helix	1125	1145	0.89
Non-Cytoplasmic	1146	1152	0.79
Transmembrane Helix	1153	1175	0.93
Cytoplasmic	1176	1182	0.88
Transmembrane Helix	1183	1203	0.91
Non-Cytoplasmic	1204	1251	0.61
Transmembrane Helix	1252	1273	0.88
Cytoplasmic	1274	1292	0.54
Transmembrane Helix	1293	1314	0.80
Non-Cytoplasmic	1315	1369	0.66
Transmembrane Helix	1370	1390	0.85
Cytoplasmic	1391	1424	0.88
Transmembrane Helix	1425	1444	0.83
Non-Cytoplasmic	1445	1448	0.54
Transmembrane Helix	1449	1468	0.79
Cytoplasmic	1469	1486	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEHSWRETA GTAATSSFVP RAGTAPRDTY LPRPALEQSG LSRRHRPGVP PQSWARLRCE  60
   61 RRCHGLASRV RPLGQSVAGE LSGGGAPASS LRVPDLPGPV GPPRAPASGS WTGDPVNMAS 120
  121 ATVAAARRGL GRAPPLIWRG YQTERGVYGY RPRKPESREP RGALERPPVD HGLARLVTVY 180
  181 REHGHKAAKI NPLFTGQALL ENVPEIQALV QTLQGPFHTA GLLNMEKEEA SLEEVLVYLN 240
  241 QIYCGQISIE TSQLQSQEEK DWFAKRFEEL QKETFTTEER KHLSKLMLES QLMFRKMQGL 300
  301 SEFPENFSAT GDVLSHLTSS VDLDFGAHHP LHVTMLPNPS HLEAVNPVAV GKTRGRQQSR 360
  361 QDGDYSPDNS AQPGDRVICL QVHGDASFCG QGIVPETFTL SSLPHFRIGG SVHLIVNNQL 420
  421 GYTTPAERGR SSLYCSDIGK LVGCAIVHVN GDSPEEVVRA TRLAFEYQRQ FRKDVIIDLL 480
  481 CYRQWGHNEL DEPFFTNPIM YKIIRARKSI PDTYAEHLIA SGLMTQEEVS EIKSSYYAKL 540
  541 NDHLNNMAHY SPPALNLQAH WQGLAQPEAR ITTWSTGVPL DLLQFVGVKS VEVPRELQMH 600
  601 SHLLKTHVQS RMEKMMDGTK LDWATAEALA LGSLLAQGFN VRLSGQDVGR GTFSQRHAMV 660
  661 VCQETDDTYI PLNHMDPNQK GFLELFKDVD ESVFLAYLRK AKSRILKVTC SLRIVVEFSF 720
  721 IYLKQVFKCL AHDVYENNLL LKMCDSVEEG VDGDTVNMFV VHPTTPAQYF HLLRRQMVRN 780
  781 FRKPLIVASP KMLLRLPAAV STLQEMAPGT TFNPVIGDSS VDPEKVKTLV FCSGKHYYSL 840
  841 LKQRESLGPK RHDFAIIRVE ELCPFPLDSL QQEMSKYKHV KVVWEVPGDW QKPRPSPLLP 900
  901 ATDHVFQNPL PRHATARPSP APRPASRASR GARGHHGNAA DVVQRPAWGR GWAGRARGSR 960
  961 GGGGACAGLG GACAGLAGSR WEPVPRPEPR EPSEGIAEAA VPPWASPAAA MGIKFLEVIK1020
 1021 PFCAVLPEIQ KPERKIQFRE KVLWTAITLF IFLVCCQIPL FGIMSSDSAD PFYWMRVILA1080
 1081 SNRGTLMELG ISPIVTSGLI MQLLAGAKII EVGDTPKDRA LFNGAQKLFG MIITIGQAIV1140
 1141 YVMTGMYGDP AEMGAGICLL IIIQLFVAGL IVLLLDELLQ KGYGLGSGIS LFIATNICET1200
 1201 IVWKAFSPTT INTGRGTEFE GAVIALFHLL ATRTDKVRAL REAFYRQNLP NLMNLIATVF1260
 1261 VFAVVIYFQG FRVDLPIKSA RYRGQYSSYP IKLFYTSNIP IILQSALVSN LYVISQMLSV1320
 1321 RFSGNFLVNL LGQWADVSGG GPARSYPVGG LCYYLSPPES MGAIFEDPVH VVVYIIFMLG1380
 1381 SCAFFSKTWI EVSGSSAKDV AKQLKEQQMV MRGHRDTSMV HELNRYIPTA AAFGGLCIGA1440
 1441 LSVLADFLGA IGSGTGILLA VTIIYQYFEI FVKEQAEVGG MGALFF