YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109087974, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEKSFLVS GDNYPPPNPG YPGGPQPPMP PYAQPPYPGA PYPQPPFQPS PYGQPGYPHG  60
   61 PSPYPQGGYP QGPYPQGAYP QGPYPQEGYP QGPYPQGGYP QGPYPQSPFP PNPYGQPQAF 120
  121 PGQDPDSPQH GNYQEEGPPS YYDNQDFPAT DWDDKSIRQA FIRKVFLVLT LQLSVTLSTV 180
  181 SVFTFVGEVK GFVRENVWTY YVSYAVFFIS LIVLSCCGDF RRKHPWNLVA LSVLTASLSY 240
  241 MVGMIASFYN TEAVIMAVGI TTAVCFTVVI FSMQTRYDFT SCMGVLLVSM VVLFIFAILC 300
  301 IFIRNRILEI VYASLGALLF TCFLAVDTQL LLGNKQLSLS PEEYVFAALN LYTDIINIFL 360
  361 YILTIIGRAK E

Type	Start	End	Confidence
Cytoplasmic	1	164	0.98
Transmembrane Helix	165	187	0.92
Non-Cytoplasmic	188	196	0.92
Transmembrane Helix	197	218	0.91
Cytoplasmic	219	225	0.85
Transmembrane Helix	226	247	0.87
Non-Cytoplasmic	248	252	0.75
Transmembrane Helix	253	273	0.84
Cytoplasmic	274	281	0.67
Transmembrane Helix	282	303	0.94
Non-Cytoplasmic	304	309	0.70
Transmembrane Helix	310	332	0.86
Cytoplasmic	333	343	0.73
Transmembrane Helix	344	367	0.69
Non-Cytoplasmic	368	371	0.52