YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109087577
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGRVPARG GAPRSLAPRP QTQRGPDGSD VAHGAGSPSL VGTRLLALLG SGARRTQAAS  60
   61 FILPSPAKTR RRLRPRPLPG GSGRPSRAPS ACALRRAGGK NVRTLSLIVC TFTYLLVGAA 120
  121 VFDALESDHE MREEEKLKAE EIRIKGKYNI SSEDYRQLEL VILQSEPHRA GVQWKFAGSF 180
  181 YFAITVITTI GYGHAAPGTD AGKAFCMFYA VLGIPLTLVM FQSLGERMNT FVRYLLKRIK 240
  241 KCCGMRNTDV SMENMVTVGF FSCMGTLCIG AAAFSQCEEW SFFHAYYYCF ITLTTIGFGD 300
  301 YVALQTKGAL QKKPLYVAFS FMYILVGLTV IGAFLNLVVL RFLTMNSEDE RRDAEERASL 360
  361 AGNRNSMVIH IPEEPRPSRP RYKADVADLQ SVCSCTCYRS QDYGGRSAAP QNSFSAKLAP 420
  421 HYFHSISYKI EEISPSTLKN SLFPSPISSI SPGLHSFTDH QRLMKRRKSV

Type	Start	End	Confidence
Cytoplasmic	1	175	0.79
Transmembrane Helix	176	196	0.88
Non-Cytoplasmic	197	203	0.59
Transmembrane Helix	204	225	0.88
Cytoplasmic	226	254	0.68
Transmembrane Helix	255	275	0.94
Non-Cytoplasmic	276	282	0.64
Transmembrane Helix	283	304	0.92
Cytoplasmic	305	314	0.68
Transmembrane Helix	315	339	0.85
Non-Cytoplasmic	340	470	0.71