YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109082559
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGVRPLRG LSALCRVLLF LSQFCILSGG EQSQALAQSI KDPGPTRTFT VVPRAAESTE  60
   61 IPPYVMKCPS NGLCSRLPAD CIDCTTNFSC IYGKPVTFDC AVKPSVTCVD QDFKSQKNFI 120
  121 INMTCRFCWQ LPETDYECTN STSCMTVSCP RQRYPANCTV RDHVHCLGNR TFPKMLYCNW 180
  181 TGGYKWSTAL ALSITLGGFG ADRFYLGQWR EGLGKLFSFG GLGIWTLIDV LLIGVGYVGP 240
  241 ADGSLYI

Type	Start	End	Confidence
Signal Peptide	1	37	0.96
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	185	0.97
Transmembrane Helix	186	206	0.79
Cytoplasmic	207	215	0.79
Transmembrane Helix	216	238	0.85
Non-Cytoplasmic	239	247	0.85