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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109079680
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSPPLLIIS VAGIIECKPD RLLWRPGSTS PQSVSFLHGK VVMESLGRPI PPTSSPSLLP  60
   61 SAQLPSSHNP PPVSCQMPLL DSNTSHQIMD TNPDEEFSPN SYLLRACSGP QQASSSGPPN 120
  121 HHSQSTLRPP LPPPHNHTLS HHHSSANSLN RNSLTNRRSQ IHAPAPAPND LATTPESVQL 180
  181 QDSWVLNSNV PLETRHFLFK TSSGSTPLFS SSSPGYPLTS GTVYTPPPRL LPRNTFSRKA 240
  241 FKLKKPSKYC SWKCAALSAI AAALLLAILL AYFIAMHLLG LNWQLQPADG HTFNNGIRTG 300
  301 LPGNDDVATM PSGGKVPWSL KNSSIDSGEA EVGRRVTQEV PPGVFWRSQI HISQPQFLKF 360
  361 NISLGKDALF GVYIRRGLPP SHAQYDFMER LDGKEKWSVV ESPRERRSIQ TLVQNEAVFV 420
  421 QYLDVGLWHL AFYNDGKDKE MVSFNTVVLD SVQDCPRNCH GNGECVSGVC HCFPGFLGAD 480
  481 CAKAACPVLC SGNGQYSKGT CQCYSGWKGA ECDVPMNQCI DPSCGGHGSC IDGNCVCSAG 540
  541 YKGQHCEEVD CLDPTCSSHG VCVNGECLCS PGWGGLNCEL ARVQCPDQCS GHGTYLPDTG 600
  601 LCSCDPNWMG PDCSVVCSVD CGTHGVCIGG ACRCEEGWTG AACDQRVCHP RCIEHGTCKD 660
  661 GKCECREGWN GEHCTIDGCP DLCNGNGRCT LGQNSWQCVC QTGWRGPGCN VAMETSCADN 720
  721 KDNEGDGLVD CLDPDCCLQS ACQNSLLCRG SRDPLDIIQQ GQTDWPAVKS FYDRIKLLAG 780
  781 KDSTHIIPGE NPFNSSLVSL IRGQVVTTDG TPLVGVNVSF VKYPKYGYTI TRQDGTFDLI 840
  841 ANGGASLTLH FERAPFMSQE RTVWLPWNSF YAMDTLVMKT EENSIPSCDL SGFVRPDPII 900
  901 ISSPLSTFFS AAPGQNPIVP ETQVLHEEIE LPGSSVKLRY LSSRTAGYKS LLKITMTQST 960
  961 VPLNLIRVHL MVAVEGHLFQ KSFQASPNLA YTFIWDKTDA YGQRVYGLSD AVVSVGFEYE1020
 1021 TCPSLILWEK RTALLQGFEL DPSNLGGWSL DKHHILNVKS GILHKGTGEN QFLTQQPAII1080
 1081 TSIMGNGRRR SISCPSCNGL AEGNKLLAPV ALAVGIDGSL YVGDFNYIRR IFPSRNVTSI1140
 1141 LELRNKEFKH SNNPAHKYYL AVDPVSGSLY VSDTNSRRIY RVKSLSGAKD LAGNSEVVAG1200
 1201 TGEQCLPFDE ARCGDGGKAI DATLMSPRGI AVDKNGLMYF VDATMIRKVD QNGIISTLLG1260
 1261 SNDLTAVRPL SCDSSMDVAQ VRLEWPTDLA VNPMDNSLYV LENNVILRIT ENHQVSIIAG1320
 1321 RPMHCQVPGI DYSLSKLAIH SALESASAIA ISHTGVLYIT ETDEKKINRL RQVTTNGEIC1380
 1381 LLAGAASDCD CKNDVNCNCY SGDDAYATDA ILNSPSSLAV APDGTIYIAD LGNIRIRAVS1440
 1441 KNKPVLNAFN QYEAASPGEQ ELYVFNADGI HQYTVSLVTG EYLYNFTYSA DNDVTELIDN1500
 1501 NGNSLKIRRD SSGMPRHLLM PDNQIITLTV GTNGGLKVVS TQNLELGLMT YDGNTGLLAT1560
 1561 KSDETGWTTF YDYDHEGRLT NVTRPTGVVT SLHREMEKSI TIDIENSNRD DDVTVITNLS1620
 1621 SVEASYTVVQ DQVRNSYQLC NNGTLRVMYA NGMGVSFHSE PHVLAGTITP TIGRCNISLP1680
 1681 MENGLNSIEW RLRKEQIKGK VTIFGRKLRV HGRNLLSIDY DRNIRTEKIY DDHRKFTLRI1740
 1741 IYDQVGRPFL WLPSSGLAAV NVSYFFNGRL AGLQRGAMSE RTDIDKQGRI VSRMFADGKV1800
 1801 WSYSYLDKSM VLLLQSQRQY IFEYDSSDRL LAVTMPSVAR HSMSTHTSIG YIRNIYNPPE1860
 1861 SNASVIFDYS DDGRILKTSF LGTGRQVFYK YGKLSKLSEI VYDSTAVTFG YDETTGVLKM1920
 1921 VNLQSGGFSC TIRYRKIGPL VDKQIYRFSE EGMVNARFDY TYHDNSFRIA SIKPVISETP1980
 1981 LPVDLYRYDE ISGKVEHFGK FGVIYYDINQ IITTAVMTLS KHFDTHGRIK EVQYEMFRSL2040
 2041 MYWMTVQYDS MGRVIKRELK LGPYANTTKY TYDYDGDGQL QSVAVNDRPT WRYSYDLNGN2100
 2101 LHLLNPGNSV RLMPLRYDLR DRITRLGDVQ YKIDDDGYLC QRGSDIFEYN SKGLLTRAYN2160
 2161 KASGWSVQYR YDGVGRRASY KTNLGHHLQY FYSDLHNPTR ITHVYNHSNS EITSLYYDLQ2220
 2221 GHLFAMESSS GEEYYVASDN TGTPLAVFSI NGLMIKQLQY TAYGEIYYDS NPDFQMVIGF2280
 2281 HGGLYDPLTK LVHFTQRDYD VLAGRWTSPD YTMWKNVGKE PAPFNLYMFK SNNPLSSELD2340
 2341 LKNYVTDVKS WLVMFGFQLS NIIPGFPRAK MYFVPPPYEL SESQASENGQ VSGGVQQTTE2400
 2401 RHNQAFMALE GQVITKKLHA SIREKAGHWF ATTTPIIGKG IMFAIKEGRV TTGVSSIASE2460
 2461 DSRKVASVLN NAYYLDKMHY SIEGKDTHYF VKIGSADGDL VTLGTTIGRK VLESGVNVTV2520
 2521 SQPTLLVNGR TRRFTNIEFQ YSTLLLSIRY GLTPDTLDEE KARVLDQARQ RALGTAWAKE2580
 2581 QQKARDGREG SRLWTEGEKQ QLLSTGRVQG YEGYYVLPVE QYPELADSSS NIQFLRQNEM2640
 2641 GKR

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