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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109079674
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKDRRHRS LTRGRCGKEC RYTSSSLDSE DCRVPTQKSY SSSETLKAYD HDSRMHYGNR  60
   61 VTDLVHRESD EFPRQGTNFT LAELGICEPS PHRSGYCSDM GILHQGYSLS TGSDADSDTE 120
  121 GGMSPEHAIR LWGRGIKSRR SSGLSSRENS ALTLTDSDNE NKSDDENGRP IPPTSSPSLL 180
  181 PSAQLPSSHN PPPVSCQMPL LDSNTSHQIM DTNPDEEFSP NSYLLRACSG PQQASSSGPP 240
  241 NHHSQSTLRP PLPPPHNHTL SHHHSSANSL NRNSLTNRRS QIHAPAPAPN DLATTPESVQ 300
  301 LQDSWVLNSN VPLETRHFLF KTSSGSTPLF SSSSPGYPLT SGTVYTPPPR LLPRNTFSRK 360
  361 AFKLKKPSKY CSWKCAALSA IAAALLLAIL LAYFIAMHLL GLNWQLQPAD GHTFNNGIRT 420
  421 GLPGNDDVAT MPSGGKVPWS LKNSSIDSGE AEVGRRVTQE VPPGVFWRSQ IHISQPQFLK 480
  481 FNISLGKDAL FGVYIRRGLP PSHAQYDFME RLDGKEKWSV VESPRERRSI QTLVQNEAVF 540
  541 VQYLDVGLWH LAFYNDGKDK EMVSFNTVVL DSVQDCPRNC HGNGECVSGV CHCFPGFLGA 600
  601 DCAKAACPVL CSGNGQYSKG TCQCYSGWKG AECDVPMNQC IDPSCGGHGS CIDGNCVCSA 660
  661 GYKGQHCEEV DCLDPTCSSH GVCVNGECLC SPGWGGLNCE LARVQCPDQC SGHGTYLPDT 720
  721 GLCSCDPNWM GPDCSVEVCS VDCGTHGVCI GGACRCEEGW TGAACDQRVC HPRCIEHGTC 780
  781 KDGKCECREG WNGEHCTIDG CPDLCNGNGR CTLGQNSWQC VCQTGWRGPG CNVAMETSCA 840
  841 DNKDNEGDGL VDCLDPDCCL QSACQNSLLC RGSRDPLDII QQGQTDWPAV KSFYDRIKLL 900
  901 AGKDSTHIIP GENPFNSSLV SLIRGQVVTT DGTPLVGVNV SFVKYPKYGY TITRQDGTFD 960
  961 LIANGGASLT LHFERAPFMS QERTVWLPWN SFYAMDTLVM KTEENSIPSC DLSGFVRPDP1020
 1021 IIISSPLSTF FSAAPGQNPI VPETQVLHEE IELPGSSVKL RYLSSRTAGY KSLLKITMTQ1080
 1081 STVPLNLIRV HLMVAVEGHL FQKSFQASPN LAYTFIWDKT DAYGQRVYGL SDAVVSVGFE1140
 1141 YETCPSLILW EKRTALLQGF ELDPSNLGGW SLDKHHILNV KSGILHKGTG ENQFLTQQPA1200
 1201 IITSIMGNGR RRSISCPSCN GLAEGNKLLA PVALAVGIDG SLYVGDFNYI RRIFPSRNVT1260
 1261 SILELRNKEF KHSNNPAHKY YLAVDPVSGS LYVSDTNSRR IYRVKSLSGA KDLAGNSEVV1320
 1321 AGTGEQCLPF DEARCGDGGK AIDATLMSPR GIAVDKNGLM YFVDATMIRK VDQNGIISTL1380
 1381 LGSNDLTAVR PLSCDSSMDV AQVRLEWPTD LAVNPMDNSL YVLENNVILR ITENHQVSII1440
 1441 AGRPMHCQVP GIDYSLSKLA IHSALESASA IAISHTGVLY ITETDEKKIN RLRQVTTNGE1500
 1501 ICLLAGAASD CDCKNDVNCN CYSGDDAYAT DAILNSPSSL AVAPDGTIYI ADLGNIRIRA1560
 1561 VSKNKPVLNA FNQYEAASPG EQELYVFNAD GIHQYTVSLV TGEYLYNFTY SADNDVTELI1620
 1621 DNNGNSLKIR RDSSGMPRHL LMPDNQIITL TVGTNGGLKV VSTQNLELGL MTYDGNTGLL1680
 1681 ATKSDETGWT TFYDYDHEGR LTNVTRPTGV VTSLHREMEK SITIDIENSN RDDDVTVITN1740
 1741 LSSVEASYTV VQDQVRNSYQ LCNNGTLRVM YANGMGVSFH SEPHVLAGTI TPTIGRCNIS1800
 1801 LPMENGLNSI EWRLRKEQIK GKVTIFGRKL RVHGRNLLSI DYDRNIRTEK IYDDHRKFTL1860
 1861 RIIYDQVGRP FLWLPSSGLA AVNVSYFFNG RLAGLQRGAM SERTDIDKQG RIVSRMFADG1920
 1921 KVWSYSYLDK SMVLLLQSQR QYIFEYDSSD RLLAVTMPSV ARHSMSTHTS IGYIRNIYNP1980
 1981 PESNASVIFD YSDDGRILKT SFLGTGRQVF YKYGKLSKLS EIVYDSTAVT FGYDETTGVL2040
 2041 KMVNLQSGGF SCTIRYRKIG PLVDKQIYRF SEEGMVNARF DYTYHDNSFR IASIKPVISE2100
 2101 TPLPVDLYRY DEISGKVEHF GKFGVIYYDI NQIITTAVMT LSKHFDTHGR IKEVQYEMFR2160
 2161 SLMYWMTVQY DSMGRVIKRE LKLGPYANTT KYTYDYDGDG QLQSVAVNDR PTWRYSYDLN2220
 2221 GNLHLLNPGN SVRLMPLRYD LRDRITRLGD VQYKIDDDGY LCQRGSDIFE YNSKGLLTRA2280
 2281 YNKASGWSVQ YRYDGVGRRA SYKTNLGHHL QYFYSDLHNP TRITHVYNHS NSEITSLYYD2340
 2341 LQGHLFAMES SSGEEYYVAS DNTGTPLAVF SINGLMIKQL QYTAYGEIYY DSNPDFQMVI2400
 2401 GFHGGLYDPL TKLVHFTQRD YDVLAGRWTS PDYTMWKNVG KEPAPFNLYM FKSNNPLSSE2460
 2461 LDLKNYVTDV KSWLVMFGFQ LSNIIPGFPR AKMYFVPPPY ELSESQASEN GQVSGGVQQT2520
 2521 TERHNQAFMA LEGQVITKKL HASIREKAGH WFATTTPIIG KGIMFAIKEG RVTTGVSSIA2580
 2581 SEDSRKVASV LNNAYYLDKM HYSIEGKDTH YFVKIGSADG DLVTLGTTIG RKVLESGVNV2640
 2641 TVSQPTLLVN GRTRRFTNIE FQYSTLLLSI RYGLTPDTLD EEKARVLDQA RQRALGTAWA2700
 2701 KEQQKARDGR EGSRLWTEGE KQQLLSTGRV QGYEGYYVLP VEQYPELADS SSNIQFLRQN2760
 2761 EMGKR

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