YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109078451
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	287	0.76
Transmembrane Helix	288	309	0.75
Non-Cytoplasmic	310	314	0.49
Transmembrane Helix	315	345	0.75
Cytoplasmic	346	361	0.68
Transmembrane Helix	362	385	0.87
Non-Cytoplasmic	386	406	0.78
Transmembrane Helix	407	426	0.94
Cytoplasmic	427	433	0.73
Transmembrane Helix	434	455	0.94
Non-Cytoplasmic	456	484	0.82
Transmembrane Helix	485	507	0.87
Cytoplasmic	508	518	0.76
Transmembrane Helix	519	541	0.86
Non-Cytoplasmic	542	594	0.86
Transmembrane Helix	595	618	0.81
Cytoplasmic	619	649	0.91
Transmembrane Helix	650	672	0.84
Non-Cytoplasmic	673	674	0.59
Transmembrane Helix	675	697	0.82
Cytoplasmic	698	710	0.79
Transmembrane Helix	711	733	0.91
Non-Cytoplasmic	734	1210	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPVPTAPSS GAPGLAGVGE TPPAAALAAA RVELPGTAVP SVPEDAAPAS RDGGGVRGEG  60
   61 AAAAGDGLGR PLGPTPSQSR FQVDLVSENA GRAAAAAAAA AAAAAAGAGA GAKQTPADGE 120
  121 GGGESGPAKG SEEAKGRFRV NFVDPAASSS AEDSLSDAAG VGGDGPNVSF QNGGDTVLSE 180
  181 GSSLHSGGGG SGHHQHYYYD THTNTYYLRT FGHNTMDAVP RIDHYRHTAA QLGEKLLRPS 240
  241 LAELHDELEK EPFEDGFANG EESTPTRDAV VTYTAESKGV VKFGWIKGVL VRCMLNIWGV 300
  301 MLFIRLSWIV GQAGIGLSVL VIMMATVVTT ITGLSTSAIA TNGFVRGGGA YYLISRSLGP 360
  361 EFGGAIGLIF AFANAVAVAM YVVGFAETVV ELLKEHSILM IDEINDIRII GAITVVILLG 420
  421 ISVAGMEWEA KAQIVLLVIL LLAIGDFVIG TFIPLESKKP KGFFGYKSEI FNENFGPDFR 480
  481 EEETFFSVFA IFFPAATGIL AGANISGDLA DPQSAIPKGT LLAILITTLV YVGIAVSVGS 540
  541 CVVRDATGNV NDTIVTELTN CTSAACKLNF DFSSCESSPC SYGLMNNFQV MSMVSGFTPL 600
  601 ISAGIFSATL SSALASLVSA PKIFQALCKD NIYPAFQMFA KGYGKNNEPL RGYILTFLIA 660
  661 LGFILIAELN VIAPIISNFF LASYALINFS VFHASLAKSP GWRPAFKYYN MWISLLGAIL 720
  721 CCIVMFVINW WAALLTYVIV LGLYIYVTYK KPDVNWGSST QALTYLNALQ HSIRLSGVED 780
  781 HVKNFRPQCL VMTGAPNSRP ALLHLVHDFT KNVGLMICGH VHMGPRRQAM KEMSIDQAKY 840
  841 QRWLIKNKMK AFYAPVHADD LREGAQYLMQ AAGLGRMKPN TLVLGFKKDW LQADMRDVDM 900
  901 YINLFHDAFD IQYGVVVIRL KEGLDISHLQ GQEELLSSQE KSPGTKDVVV SVEYSKKSDL 960
  961 DTSKPLSEKP VTHKVEEEDG KTATQPLLKK ESKGPIVPLN VADQKLLEAS TQFQKKQGKN1020
 1021 TIDVWWLFDD GGLTLLIPYL LTTKKKWKDC KIRVFIGGKI NRIDHDRRAM ATLLSKFRID1080
 1081 FSDIMVLGDI NTKPKKENII AFEEMIEPYR LHEDDKEQDI ADKMKEDEPW RITDNELELY1140
 1141 KTKTYRQIRL NELLKEHSST ANIIVMSLPV ARKGAVSSAL YMAWLEALSK DLPPILLVRG1200
 1201 NHQSVLTFYS