YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109078228
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVQELEER WSNKDACLLS ACFLQQSDLR RGPTRDTKCT PPRHILFTPQ WVVNSQATSQ  60
   61 RPRRCRPAPA RVWRCSLGAG QGRRGARRPG GASGGEWRTR RRAAVPACHC PAAVPAPVYP 120
  121 ALGTASGSAT VPAMSAAMRE RFDRFLHEKN CMTDLLAKLE AKTGVNRSFI ALGVIGLVAL 180
  181 YLVFGYGASL LCNLIGFGYP AYISIKAIES PNKEDDTQWL TYWVVYGVFS IAEFFSDIFL 240
  241 SWFPFYYMLK CGFLLWCMAP SPSNGAELLY KRIIRPFFLK HESQMDSVVK DLKDKAKETA 300
  301 DAITKEAKKA TVNLLGEEKK ST

Type	Start	End	Confidence
Cytoplasmic	1	167	0.84
Transmembrane Helix	168	192	0.80
Non-Cytoplasmic	193	221	0.60
Transmembrane Helix	222	249	0.69
Cytoplasmic	250	322	0.80