YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109078012
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.39
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSKKKMQDS SRTHPEPRLV LSVPPTVSAS SVWSLDKDAA SRSLGVAGLR TWRRRTARKA  60
   61 ETLAAEAEAD WVSPRRRLGH ELARDRGGDG PFGHLVAACP LLTRTDFNIM AGRHQNRSFP 120
  121 LPGVQSSGQV HAFGNCSDND MLEEDAEMYE LRSRGKEKVR RSTSRDRLDD IIVLTKDIQE 180
  181 GDTLNAIALQ YCCTVADIKR VNNLISDQDF FALRSIKIPV KKFSSLTETL CPPKGRQTSR 240
  241 HSSVQYSSGQ QEILPANDSL AYSDSAGSFL KEVDRDIEQI VKCTDNKREN LNEVVSALTA 300
  301 QQIRFEPDNK NTQRKDPYYG ADWGIGWWTA VVIMLIVGII TPVFYLLYYE ILAKVDVSHH 360
  361 STVDSSHLHS KITPPSQQRE MENGIVPTKG IHFGQQDDNK LYSQDSQSPA AQHET

Type	Start	End	Confidence
Signal Peptide	1	34	0.42
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	323	0.74
Transmembrane Helix	324	348	0.83
Cytoplasmic	349	415	0.66