YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109077463
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.53
Transmembrane Helix	58	78	0.90
Cytoplasmic	79	95	0.86
Transmembrane Helix	96	117	0.90
Non-Cytoplasmic	118	123	0.70
Transmembrane Helix	124	144	0.80
Cytoplasmic	145	152	0.62
Transmembrane Helix	153	169	0.90
Non-Cytoplasmic	170	200	0.74
Transmembrane Helix	201	221	0.84
Cytoplasmic	222	239	0.88
Transmembrane Helix	240	260	0.92
Non-Cytoplasmic	261	267	0.86
Transmembrane Helix	268	289	0.92
Cytoplasmic	290	304	0.83
Transmembrane Helix	305	323	0.95
Non-Cytoplasmic	324	342	0.92
Transmembrane Helix	343	363	0.94
Cytoplasmic	364	419	0.97
Transmembrane Helix	420	440	0.94
Non-Cytoplasmic	441	450	0.80
Transmembrane Helix	451	470	0.94
Cytoplasmic	471	486	0.81
Transmembrane Helix	487	506	0.91
Non-Cytoplasmic	507	521	0.82
Transmembrane Helix	522	544	0.89
Cytoplasmic	545	591	0.98
Transmembrane Helix	592	614	0.91
Non-Cytoplasmic	615	619	0.87
Transmembrane Helix	620	642	0.91
Cytoplasmic	643	766	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKYGGDVL AGPGGGGGGL GPVDVPSARL TKYIVLLCFT KFLKAVGLFE SYDLLKAVHI  60
   61 VQFIFILKLG TAFFMVLFQK PFSSGKTITK HQWIKIFKHA VAGCIISLLW FFGLTLCGPL 120
  121 RTLLLFEHSD IVVISLLSVL FTSSGGGPAK TRGAAFFIIA VICLLLFDND DLMAKMAEHP 180
  181 EGHHDSALTH MLYTAIAFLG VADHKGGVLL LVLALCCKVG FHTASRKLSI DVGGAKRLQA 240
  241 LSHLVSVLLL CPWVIVLSVT TESKVESWFS LIMPFATVIF FVMILDFYVD SICSVKMEVS 300
  301 KCARYGSFPI FISALLFGNF WTHPITDQLR AMNKAAHQES TEHVLSGGVV VSAIFFILSA 360
  361 NILSSPSKRG QKGTLIGYSP EGTPLYNFMG DAFQHSSQSI PRFIKESLKQ ILEESDSRQI 420
  421 FYFLCLNLLF TFVELFYGVL TNSLGLISDG FHMLFDCSAL VMGLFAALMS RWKATRIFSY 480
  481 GYGRIEILSG FINGLFLIVI AFFVFMESVA RLIDPPELDT HMLTPVSVGG LIVNLIGICA 540
  541 FSHAHSHAHG ASQGSCHSSD HSHSHHMHGH SDHGHGHSHG SAGGGMNANM RGVFLHVLAD 600
  601 TLGSIGVIVS TILIEQFGWF IADPLCSLFI AVLIFLSVVP LIKDACQVLL LRLPPEYEKE 660
  661 LHIALEKIQK IEGLISYRDP HFWRHSANIV AGTIHIQVTS DVLEQRIVQQ VTGILKDAGV 720
  721 NNLTIQVEKE AYFQHMSGLS TGFHDVLAMT KQMESMKYCK DGTYIM