YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109077030
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRDSPRRQ CAQRRRRAPQ LQLSSPQRPG PAQPQPRARR AQPCHLPPTQ SSGGCSDLGF  60
   61 WGCGGQAREL SAALALFAAA AAGVLAAASR ALLLPRATPG LRTLAPDLLG GAPRSSHQPG 120
  121 WVSWLGLGAP GVNVQPGVCG DPIRGAAAGR DFKMKLWDVV AVCLVLLHTA SAFPLPAGKR 180
  181 PPEAPAEDRS LGRRRAPFAL SSDSNMPEDY PDQFDDVMDF IQATIKRLKR SPDKQMAVLP 240
  241 RRERNRQAAA ANPENSKGKG RRGQRGKNRG CVLTAIHLNV TDLGLGYETK EELIFRYCSG 300
  301 SCDAAETTYD KILKNLSRNR RLVSDKVGQA CCRPTAFDDD LSFLDDNLVY HILRKHSAKR 360
  361 CGCI

Type	Start	End	Confidence
Cytoplasmic	1	69	0.68
Transmembrane Helix	70	94	0.83
Non-Cytoplasmic	95	120	0.63
Transmembrane Helix	121	139	0.37
Cytoplasmic	140	155	0.62
Transmembrane Helix	156	175	0.62
Non-Cytoplasmic	176	364	0.87