YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109076981
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSNGEEPK MGGRMERFQQ GVRKRTLLAK KKVQNITKED VKSYLFRNAF VLLTVTAVIV  60
   61 GTILGFTLRP YRMSYREVKY FSFPGELLMR MLQMLVLPLI ISSLVTGMAA LDSKASGKMG 120
  121 MRAVVYYMTT TIIAVVIGII IVIIIHPGKG TKENMHREGK IVQVTAADAF LDLIRNMFPP 180
  181 NLVEACFKQF KTNYEKRSFK TLTRITEELV PVPGSVNGVN ALGLVVFSMC FGFVIGNMKE 240
  241 QGQALREFFD SLNEAIMRLV AVIMWYAPVG ILFLIAGKIV EMEDMGVIGG QLAMYTVTVI 300
  301 VGLFIHAVIV LPLLYFLVTR KNPWVFIGGL LQALITALGT SSSSATLPIT FKCLEENNGV 360
  361 DKRVTRFVLP VGATINMDGT ALYEALAAIF IAQVNNFELN FGQIITISIT ATAASIGAAG 420
  421 IPQAGLVTMV IVLTSVGLPT DDITLIIAVD WFLDRLRTTT NVLGDSLGAG IVEHLSRHEL 480
  481 KNRDVEMGNS VIEENEMKKP YQLIAQDNET EKPIDSETKM

Type	Start	End	Confidence
Cytoplasmic	1	44	0.96
Transmembrane Helix	45	68	0.87
Non-Cytoplasmic	69	90	0.87
Transmembrane Helix	91	111	0.93
Cytoplasmic	112	123	0.87
Transmembrane Helix	124	146	0.95
Non-Cytoplasmic	147	217	0.95
Transmembrane Helix	218	238	0.90
Cytoplasmic	239	255	0.93
Transmembrane Helix	256	277	0.92
Non-Cytoplasmic	278	292	0.84
Transmembrane Helix	293	316	0.90
Cytoplasmic	317	323	0.79
Transmembrane Helix	324	345	0.80
Non-Cytoplasmic	346	403	0.61
Transmembrane Helix	404	438	0.63
Cytoplasmic	439	520	0.60