YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109075608
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHREPPKKKA EKRLFDASSF GKDLLAGGVA AAVSKTAVAP IERVKLLLQV QASSKQISPE  60
   61 ARYKGMVDCL VRIPREQGFF SFWRGNLANV IRYFPTQALN FAFKDKYKQL FMSGVNKEKQ 120
  121 FWRWFLANLA SGGAAGATSL CVVYPLDFAR TRLGVDIGKD AQRQFKGLGD CIMKIAKSDG 180
  181 IAGLYQGFGV SVQGIIVYRA SYFGAYDTVK GLLPKPKKTP FLVSFFIAQV VTTCSGILSY 240
  241 PFDTVRRRMM MQSGEAKRQY KGTLDCFVKI YQHEGINSFF RGAFSNVLRG TGGALVLVLY 300
  301 DKIKEFFHID IGGR

Type	Start	End	Confidence
Cytoplasmic	1	123	0.66
Transmembrane Helix	124	146	0.74
Non-Cytoplasmic	147	220	0.55
Transmembrane Helix	221	242	0.88
Cytoplasmic	243	314	0.63