YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCDS3690.1_1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMSVLTLQE YEFEKQFNEN EAIQWMQENW KKSFLFSALY AAFVFGGRHL MNKRAKFELR  60
   61 KPLVLWSLTL AVFSIFGALR TGAYMVYILM TKGLKQSVCD QGFYNGPVSK FWAYAFVLSK 120
  121 APELGDTIFI VLRKQKLIFL HWYHHITVLL YSWYSYKDMV AGGGWFMTMN YSVHAVMYSY 180
  181 YALRAAGFRV SRKFAMFITL SQITQMLMGC VINYLVFYWM QHDQCHSHFQ NIFWSSLMYL 240
  241 SYLVLFCHFF FEAYIGKMRK TTKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.80
Transmembrane Helix	33	52	0.83
Cytoplasmic	53	62	0.87
Transmembrane Helix	63	84	0.92
Non-Cytoplasmic	85	110	0.86
Transmembrane Helix	111	130	0.56
Cytoplasmic	131	137	0.56
Transmembrane Helix	138	155	0.62
Non-Cytoplasmic	156	161	0.77
Transmembrane Helix	162	182	0.88
Cytoplasmic	183	193	0.86
Transmembrane Helix	194	217	0.88
Non-Cytoplasmic	218	231	0.87
Transmembrane Helix	232	255	0.84
Cytoplasmic	256	265	0.95