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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109074853
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.13
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRVLHFDA PVPGPRESRR CVVTAFPLPA PGITCAPQRA SLAAGISSPT GIRRRPCSRG  60
   61 RHPGSQAVCA QRSCAARWRG FRLRASFSRQ ALGERIGFRV LGILPSSRCR MASKVLLAVA 120
  121 LWLCVETRAA SVGLPSVSLD LPRLSIQKDI LTIKANTTLQ ITCRGQRDLD WLWPNNQSGS 180
  181 EQRVEVTECS DGLFCKTLTI PKVIGNDTGA YKCFYRETDL ASVIYVYVQD YRSPFIASVS 240
  241 DQHGVVYITE NKNKTVVIPC LGSISNLNVS LCARYPEKRF VPDGNRISWD SKKGFTIPSY 300
  301 MISYAGMVFC EAKINDESYQ SIMYIVVVVG YRIYDVVLSP SHGVELSVGE KLVLNCTART 360
  361 ELNVGIDFNW EYPSSKHQHK KLVNRDLKTQ SGSEMKKFLS TLTIDGVTRS DQGLYTCAAS 420
  421 SGLMTKKNST FVRVHEKPFV AFGSGMESLV EATVGERVRI PVKYLGYPPP EIKWYKNGIP 480
  481 LESNHTVKVG HVLTIMEVSE RDTGNYTVIL TNPISKEKQS HVVSLVVYVP PQIGEKSLIS 540
  541 PVDSYQYGTT QTLTCTVYAI PPPHHIHWYW QLEEECPNEP SQAVSVTNPY PCEEWRSVED 600
  601 FQGGNKIEVN KNQFALIEGK NKTVSTLVIQ AANVSALYKC EAVNKVGRGE RVISFHVTRG 660
  661 PEITLQPDLQ PTEQESVSLW CTADKSTFEN LTWYKLGPQP LPVHVGELPT PVCKNLDTLW 720
  721 KLNATIFSNS TNDILIMELK NASLQDQGDY VCVAQDRKTK KRHCVVRQLT VLERVAPMIT 780
  781 GNLENQTTSI GETIEVSCTA SGNPPPQIMW FKDNETLVED SGIVLKDGNR NLTIRRVRKE 840
  841 DEGLYTCQAC SVLGCAKVEA FFIIEGAQEK TNLEIIILVG TAVIAMFFWL LLVIILRTVK 900
  901 RANGGELKTG YLSIVMDPDE LPLDEHCERL PYDASKWEFP RDRLKLGKPL GRGAFGQVIE 960
  961 ADAFGIDKTA TCRTVAVKML KEGATHSEHR ALMSELKILI HIGHHLNVVN LLGACTKPGG1020
 1021 PLMVIVEFCK FGNLSTYLRS KRNEFVPYKT KGARFRQGKD YVGAIPVDLK RRLDSITSSQ1080
 1081 SSASSGFVEE KSLSDVEEEE APEDLYKDFL TLEHLICYSF QVAKGMEFLA SRKCIHRDLA1140
 1141 ARNILLSEKN VVKICDFGLA RDIYKDPDYV RKGDARLPLK WMAPETIFDR VYTIQSDVWS1200
 1201 FGVLLWEIFS LGASPYPGVK IDEEFCRRLK EGTRMRAPDY TTPEMYQTML DCWHGEPSQR1260
 1261 PTFSELVEHL GNLLQANAQQ DGKDYIVLPI SETLSMEEDS GLSLPTSPVS CMEEEEVCDP1320
 1321 KFHYDNTAGI SQYLQNSKRK SRPVSVKTFE DIPLEEPEVK VIPDDNQTDS GMVLASEELK1380
 1381 TLEDRTKLAP SFSGMVSSKS RESVASEGSN QTSGYQSGYH SDDTDTTVYS SEEAELLKLI1440
 1441 EIGVQTGSTA QILQPDSGTT LSSPPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle