YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109074795
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.96
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	92	0.99
Transmembrane Helix	93	112	0.90
Cytoplasmic	113	128	0.79
Transmembrane Helix	129	152	0.92
Non-Cytoplasmic	153	158	0.84
Transmembrane Helix	159	177	0.94
Cytoplasmic	178	230	0.99
Transmembrane Helix	231	251	0.90
Non-Cytoplasmic	252	268	0.93
Transmembrane Helix	269	290	0.90
Cytoplasmic	291	300	0.74
Transmembrane Helix	301	320	0.96
Non-Cytoplasmic	321	326	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAPGNGR ASAPQLLLLF LVPLLWAPAA VRAGPDEDLS HRNKVSPALA QQLQQQQQPV  60
   61 AVQGPEPARV EKIFTPAAPV HTNKEDPATQ TNLGFIHAFV AAISVIIVSE LGDKTFFIAA 120
  121 IMAMRYNRLT VLAGAMLALG LMTCLSVLFG YATTVIPRVY TYYVSTVLFA IFGIRMLREG 180
  181 LKMSPDEGQE ELEEVQAELK KKDEEFQRTK LLNGPGDVET GTSITVPQKK WLHFISPIFV 240
  241 QALTLTFLAE WGDRSQLTTI VLAAREDPYG VAVGGTVGHC LCTGLAVIGG RMIAQKISVR 300
  301 TVTIIGGIVF LAFAFSALFI SPDSGF