YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109074492
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGRRMEML SAGRVPALLL CLGFHLLQAV LSTTVIPSCI PGESSDNCTA LVQTEDNPRV  60
   61 AQVSITKCNS DMNGYCLHGQ CIYLVDMSQN YCRCEVGYTG VRCEHFYLTV HQPLSKEYVA 120
  121 LTVILIILFL IIVVGSTYYF CRWYRNRKSK EPKKEYERVT SGDPELPQV

Type	Start	End	Confidence
Signal Peptide	1	32	0.48
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	117	0.98
Transmembrane Helix	118	141	0.93
Cytoplasmic	142	169	0.98