YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109074490
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAPLLPPAP VVLSLLILGS GHYAAGMDRN DTYSGKREPF SGDHSADGFE VTSRSEMSSG  60
   61 SEISPVSEMP SSSELSSGVD YDYSEEYDNE PQIPGYIVDD SVRVEQVVKP PKNKTESENT 120
  121 SDKPKRKKKG GKNGKNRRNR KKKNPCNAEF QNFCIHGECK YIEHLEAVTC KCQQEYFGER 180
  181 CGEKSMKTHS MIDSSLSKIA LAAIAAFMSA VILTAIAVIT VHLRKRYVRK YEGEAEERKK 240
  241 LRQENGNVHA IA

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	198	0.99
Transmembrane Helix	199	221	0.94
Cytoplasmic	222	252	0.97