YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109074220
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELRYRGSC PGPGEAVSPP PREGEAAGGD HETESTSDKE TDIDDRYGDL DSRTDSDIPE  60
   61 IPASSDRTPE ILKKALSGLS SRYDWKLSGV MIIMMVGMVK LLFFVSSWMI MLMVLGIQVK 120
  121 CFHEIITIGY RVYHSYDLPW FRTLSWHFLL CVNYFFYGET VADYFATFVQ REEQLQFLIR 180
  181 YHRFISFALY LAGFCMFVLS LVKKHYRLQF YMFAWTHVTL LITVTQSHLV IQNLFEGMIW 240
  241 FLVPISSVIC NDITAYLFGF FFGRTPLIKL SPKKTWEGFI GGFFSTVVFG FIAAYVLSKY 300
  301 QYFVCPVEYR SDVNSFVTEC EPSELFQLQT YSLPPFLKAV LRQERVSLYP FQIHSIALST 360
  361 FASLIGPFGG FFASGFKRAF KIKDFANTIP GHGGIMDRFD CQYLMATFVH VYITSFIRGP 420
  421 NPSKVLQQLL VLQPEQQLNI YKTLKTHLIE KGILQPALKV

Type	Start	End	Confidence
Cytoplasmic	1	82	0.88
Transmembrane Helix	83	104	0.80
Non-Cytoplasmic	105	108	0.49
Transmembrane Helix	109	130	0.59
Cytoplasmic	131	142	0.49
Transmembrane Helix	143	158	0.72
Non-Cytoplasmic	159	180	0.79
Transmembrane Helix	181	202	0.89
Cytoplasmic	203	210	0.79
Transmembrane Helix	211	231	0.86
Non-Cytoplasmic	232	238	0.85
Transmembrane Helix	239	262	0.90
Cytoplasmic	263	275	0.90
Transmembrane Helix	276	297	0.91
Non-Cytoplasmic	298	352	0.97
Transmembrane Helix	353	376	0.86
Cytoplasmic	377	460	0.88