YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109074106
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPGLAAAVA AHRCSWSSLC RLRLRCRAAA RGPSDRQEFS SLSTFFSDSN LNGVPCPHSS  60
   61 KPTTFQLNSF STDVPKHTLG KGLSIQQVPI FIFTRDFQCA YLLCFPVFCL VKAVLKKREY 120
  121 GSKYTQNNFI TGVRAINEFC LKSSDLEQLR KIRRRSPHED TESFTVYLRS DVEAKSLEVW 180
  181 GSPEALAREK KLRKEAEIEY RERLFRNQKI LREYRDFLGN TKPRSRTASV FFKGPGKVVM 240
  241 VAICINGLNC FFKFLAWIYT GSASMFSEAI HSLSDTCNQG LLALGIRKSV QTPDPSHPYG 300
  301 FSNMRYISSL ISGVGIFMMG AGLSWYHGVM GLLHPQPIES LLWAYCILAG SLVSEGATLL 360
  361 VAVNELRRNA RAKGMTFYKY VMESRDPSTN VILLEDTAAV LGVIIAATCM GLTSITGNPL 420
  421 YDSLGSLGVG TLLGVVSAFL IYTNTEALLG RSIQPEQVQR LTELLENDPS VRAIHDVKAT 480
  481 DLGLGKVRFK AEVDFDGRVV TRSYLEKQDF DQMLQEIQEV KTPEELETFM LKHGENIIDT 540
  541 LGAEVDRLEK ELKKRNPEVR HVDLEIL

Type	Start	End	Confidence
Signal Peptide	1	17	0.79
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	235	0.81
Transmembrane Helix	236	257	0.80
Cytoplasmic	258	305	0.87
Transmembrane Helix	306	329	0.87
Non-Cytoplasmic	330	340	0.91
Transmembrane Helix	341	363	0.94
Cytoplasmic	364	391	0.93
Transmembrane Helix	392	416	0.83
Non-Cytoplasmic	417	423	0.77
Transmembrane Helix	424	443	0.94
Cytoplasmic	444	567	0.95