YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109073722
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLGNNFAE KGTKQPLLED GFDTIPLMTP LDVNQLQFPP PDKVVVKTKT EYEPDRKKGK  60
   61 ARPPQIAEFT VSVLVLFALA FLTCVVFLVV YKVYKYDRAC PDGFVLKNTQ CIPEGLESYY 120
  121 AEQDSSAREK FYTVINHYNL AKQSITRSVS PWMSVLSEEK LSEQETEAAE KSA

Type	Start	End	Confidence
Cytoplasmic	1	65	0.60
Transmembrane Helix	66	91	0.81
Non-Cytoplasmic	92	173	0.63