YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109073195
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLAGLLKSQ FLCHLVFCYV FIASGLIINT VQLFTLLLWP INKQLFRKIN CRLSYCISSQ  60
   61 LVMLLEWWSG TECTIFTDPR AYPKYGKENA IVVLNHKFEI DFLCGWSLSE RFGLLGGSKV 120
  121 LAKKELAYVP IIGWMWYFTE MVFCSRKWEQ DRKTVATSLQ HLRDYPEKYF VRRHQSSCRG 180
  181 TSCLHVSFAL GSAQGLFCCL HGPLCERVGG KEVSKSLNYV ISAVYDCTLN FRNNENPTLL 240
  241 GVLNGKKYHA DLYVRRIPLE DIPEDDDRCS AWLHKLYQEK DAFQEEYYRT GTFPETPMVP 300
  301 PRRPWTLVNW LFWASLVLYP FFQFLVSMIR SGSSLTLASF ILVFFVASMG VRWMIGVTEI 360
  361 DKGSAYGNSD SKQKQND

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.56
Transmembrane Helix	15	39	0.84
Cytoplasmic	40	305	0.69
Transmembrane Helix	306	326	0.90
Non-Cytoplasmic	327	334	0.61
Transmembrane Helix	335	356	0.91
Cytoplasmic	357	377	0.83